PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011278-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 630aa    MW: 70288.8 Da    PI: 6.7953
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011278-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.9e-09500547448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +l+d+v q+G g+W+ I r +      Rt  ++k++w+++l
    NNU_011278-RA 500 WTLSEVIKLIDGVSQYGVGRWTEIKRLLFsssAYRTSVDLKDKWRNLL 547
                      ********************************99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.747492551IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-11494553IPR009057Homeodomain-like
SuperFamilySSF466893.51E-15494554IPR009057Homeodomain-like
SMARTSM007176.5E-10496549IPR001005SANT/Myb domain
PfamPF002493.0E-6500547IPR001005SANT/Myb domain
CDDcd116606.33E-18500548No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MFGNQQKNFG CGTMEDASGN TSMTPSEKEN ALTYKLVRVD GDGSYLPTTE DELEVQHLLA  60
EPRNDKVLVD NILCYNSGSS EKCLTIEDFP CAVDYDHMKT SSGMLHANSS EGEREESKFE  120
FLDGMFHGIG EGDLHVPNGL STSCDDYLLD TEYAERVPDL DYGSCEGSHV GNLRLESQPS  180
CLSGKNSITQ MPDLTETIPV LESTSDQSEF LLDKMTIYDL QEAFRTTFGR ETSVKDKQWL  240
KRRISFGLQN LVEFGDVSDL LESGIPNGNE GDMIFTSSND SSGRMQSLFT NVLGNVAKPV  300
SQDVERESMV AGEDLITGSS DAGKTFGVLD LGDGEGVLVA PKRLRKPTRR YIEESSDLKS  360
RYSSGRVETP TSSRDKILRV KSHSQHNRKG LGTVPLVSRQ DYLGGTGIQV PFGLRVRKGR  420
PKKNTFLVRK MFTSLLSWKS SLRSTSLAVF MKGRDSENEM EDRNSYMEHS PPESQDDMSD  480
DYATTRSGKA GVRRKHHRLW TLSEVIKLID GVSQYGVGRW TEIKRLLFSS SAYRTSVDLK  540
DKWRNLLRAS CAQMQSKREV EQGRKHAYRP IPPSVLRRVS ELAIIYPYPR ERKSKSSRTS  600
IISPSIAAAA ATPSSDTPAN SSERIILRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262885.10.0PREDICTED: uncharacterized protein LOC104601289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-61TRF-like 6